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1.
Environ Monit Assess ; 196(5): 427, 2024 Apr 04.
Artículo en Inglés | MEDLINE | ID: mdl-38573508

RESUMEN

The "spatial pattern-wind environment-air pollution" within building clusters is closely interconnected, where different spatial pattern parameters may have varying degrees of impact on the wind environment and pollutant dispersion. Due to the complex spatial structure within industrial parks, this complexity may lead to the accumulation and retention of air pollutants within the parks. Therefore, to alleviate the air pollution situation in industrial parks in China and achieve the circular transformation and construction of parks, this study takes Hefei Circular Economy Demonstration Park as the research object. The microscale Fluent model in computational fluid dynamics (CFD) is used to finely simulate the wind flow field and the diffusion process of pollutants within the park. The study analyzes the triad relationship and influence mechanism of "spatial pattern-wind environment-air pollution" within the park and studies the influence of different spatial pattern parameters on the migration and diffusion of pollutants. The results show a significant negative correlation between the content of pollutants and wind speed inside the industrial park. The better the wind conditions, the higher the air quality. The spatial morphology parameters of the building complex are the main influences on the condition of its internal wind environment. Building coverage ratio and degree of enclosure have a significant negative correlation with wind conditions. Maintaining them near 0.23 and 0.37, respectively, is favorable to the quality of the surrounding environment. Moreover, the average height of the building is positively correlated with the wind environment condition. The rate of transport and dissipation of pollutants gradually increases as the average building height reaches 16 m. Therefore, a reasonable building planning strategy and arrangement layout can effectively improve the wind environment condition inside the park, thus alleviating the pollutant retention situation. The obtained results serve as a theoretical foundation for optimizing morphological structure design within urban industrial parks.


Asunto(s)
Contaminación del Aire , Contaminantes Ambientales , Hidrodinámica , Viento , Monitoreo del Ambiente
2.
Sci Rep ; 14(1): 8194, 2024 04 08.
Artículo en Inglés | MEDLINE | ID: mdl-38589554

RESUMEN

Accurate modeling of cerebral hemodynamics is crucial for better understanding the hemodynamics of stroke, for which computational fluid dynamics (CFD) modeling is a viable tool to obtain information. However, a comprehensive study on the accuracy of cerebrovascular CFD models including both transient arterial pressures and flows does not exist. This study systematically assessed the accuracy of different outlet boundary conditions (BCs) comparing CFD modeling and an in-vitro experiment. The experimental setup consisted of an anatomical cerebrovascular phantom and high-resolution flow and pressure data acquisition. The CFD model of the same cerebrovascular geometry comprised five sets of stationary and transient BCs including established techniques and a novel BC, the phase modulation approach. The experiment produced physiological hemodynamics consistent with reported clinical results for total cerebral blood flow, inlet pressure, flow distribution, and flow pulsatility indices (PI). The in-silico model instead yielded time-dependent deviations between 19-66% for flows and 6-26% for pressures. For cerebrovascular CFD modeling, it is recommended to avoid stationary outlet pressure BCs, which caused the highest deviations. The Windkessel and the phase modulation BCs provided realistic flow PI values and cerebrovascular pressures, respectively. However, this study shows that the accuracy of current cerebrovascular CFD models is limited.


Asunto(s)
Hemodinámica , Hidrodinámica , Velocidad del Flujo Sanguíneo , Presión Arterial , Simulación por Computador , Circulación Cerebrovascular , Modelos Cardiovasculares
3.
J Biomech ; 167: 112086, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38615481

RESUMEN

Accurate assessment of portacaval pressure gradient (PCG) in patients with portal hypertension (PH) is of great significance both for diagnosis and treatment. This study aims to develop a noninvasive method for assessing PCG in PH patients and evaluate its accuracy and effectiveness. This study recruited 37 PH patients treated with transjugular intrahepatic portosystemic shunt (TIPS). computed tomography angiography was used to create three dimension (3D) models of each patient before and after TIPS. Doppler ultrasound examinations were conducted to obtain the patient's portal vein flow (or splenic vein and superior mesenteric vein). Using computational fluid dynamics (CFD) simulation, the patient's pre-TIPS and post-TIPS PCG was determined by the 3D models and ultrasound measurements. The accuracy of these noninvasive results was then compared to clinical invasive measurements. The results showed a strong linear correlation between the PCG simulated by CFD and the clinical invasive measurements both before and after TIPS (R2 = 0.998, P < 0.001 and R2 = 0.959, P < 0.001). The evaluation accuracy of this noninvasive method reached 94 %, and the influence of ultrasound result errors on the numerical accuracy was found to be marginal if the error was less than 20 %. Furthermore, the information about the hemodynamic environment in the portal system was obtained by this numerical method. Spiral flow patterns were observed in the portal vein of some patients. In a conclusion, this study proposes a noninvasive numerical method for assessing PCG in PH patients before and after TIPS. This method can assist doctors in accurately diagnosing patients and selecting appropriate treatment plans. Additionally, it can be used to further investigate potential biomechanical causes of complications related to TIPS in the future.


Asunto(s)
Hipertensión Portal , Derivación Portosistémica Intrahepática Transyugular , Humanos , Derivación Portosistémica Intrahepática Transyugular/efectos adversos , Derivación Portosistémica Intrahepática Transyugular/métodos , Hidrodinámica , Vena Porta/diagnóstico por imagen , Hipertensión Portal/diagnóstico por imagen , Hemodinámica
4.
Phys Rev E ; 109(3-1): 034403, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38632722

RESUMEN

Thiovulum majus, which is one of the fastest known bacteria, swims using hundreds of flagella. Unlike typical pusher cells, which swim in circular paths over hard surfaces, T. majus localize near hard boundaries by turning their flagella to exert a net force normal to the surface. To probe the torques that stabilize this hydrodynamically bound state, the trajectories of several thousand collisions between a T. majus cell and a wall of a quasi-two-dimensional microfluidic chamber are analyzed. Measuring the fraction of cells escaping the wall either to the left or to the right of the point of contact-and how this probability varies with incident angle and time spent in contact with the surface-maps the scattering dynamics onto a first passage problem. These measurements are compared to the prediction of a Fokker-Planck equation to fit the angular velocity of a cell in contact with a hard surface. This analysis reveals a bound state with a narrow basin of attraction in which cells orient their flagella normal to the surface. The escape angle predicted by matching these near field dynamics with the far-field hydrodynamics is consistent with observation. We discuss the significance of these results for the ecology of T. majus and their self-organization into active chiral crystals.


Asunto(s)
Flagelos , Modelos Biológicos , Natación , Hidrodinámica
5.
Phys Rev Lett ; 132(13): 138402, 2024 Mar 29.
Artículo en Inglés | MEDLINE | ID: mdl-38613272

RESUMEN

Protein folding is a fundamental process critical to cellular function and human health, but it remains a grand challenge in biophysics. Hydrodynamic interaction (HI) plays a vital role in the self-organization of soft and biological materials, yet its role in protein folding is not fully understood despite folding occurring in a fluid environment. Here, we use the fluid particle dynamics method to investigate many-body hydrodynamic couplings between amino acid residues and fluid motion in the folding kinetics of a coarse-grained four-α-helices bundle protein. Our results reveal that HI helps select fast folding pathways to the native state without being kinetically trapped, significantly speeding up the folding kinetics compared to its absence. First, the directional flow along the protein backbone expedites protein collapse. Then, the incompressibility-induced squeezing flow effects retard the accumulation of non-native hydrophobic contacts, thus preventing the protein from being trapped in local energy minima during the conformational search of the native structure. We also find that the significance of HI in folding kinetics depends on temperature, with a pronounced effect under biologically relevant conditions. Our findings suggest that HI, particularly the short-range squeezing effect, may be crucial in avoiding protein misfolding.


Asunto(s)
Hidrodinámica , Pliegue de Proteína , Humanos , Aminoácidos , Biofisica , Cinética
6.
World J Urol ; 42(1): 240, 2024 Apr 17.
Artículo en Inglés | MEDLINE | ID: mdl-38630158

RESUMEN

PURPOSE: To evaluate the impact of ureteroscope position within renal cavities as well as different locations of the tip of the ureteral access sheath (UAS) on fluid dynamics during retrograde intrarenal surgery (RIRS). MATERIALS AND METHODS: A prospective observational clinical study was performed. Measurements with a flexible ureteroscope placed in the upper, middle and lower calyces were obtained with the tip of the UAS placed either 2 cm below the pyelo-ureteric junction (PUJ), or at the level of the iliac crest. RESULTS: 74 patients were included. The outflow rates from the middle and upper calyxes were statistically significantly higher compared to the lower calyx, both with the UAS close to the pyelo-ureteric junction and at the iliac crest. When the UAS was withdrawn and positioned at the level of the iliac crest, a significant decrease in outflow rates from the upper (40.1 ± 4.3 ml/min vs 35.8 ± 4.1 ml/min) and middle calyces (40.6 ± 4.0 ml/min vs 36.8 ± 4.6 ml/min) and an increase in the outflow from the lower calyx (28.5 ± 3.3 ml/min vs 33.7 ± 5.7 ml/min) were noted. CONCLUSIONS: Our study showed that higher fluid outflow rates are observed from upper and middle calyces compared to lower calyx. This was true when the UAS was positioned 2 cm below the PUJ and at the iliac crest. Significant worsening of fluid dynamics from upper and middle calyces was observed when the UAS was placed distally at the level of the iliac crest. While the difference was statistically significant, the absolute change was not significant. In contrast, for lower calyces, a statistically significant improvement was documented.


Asunto(s)
Uréter , Ureteroscopios , Humanos , Hidrodinámica , Riñón , Endoscopía , Uréter/cirugía
7.
Sci Data ; 11(1): 421, 2024 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-38653962

RESUMEN

Nearshore hydro- and morphodynamic data were collected during a field experiment under calm conditions, moderate conditions, and storm conditions with dune erosion in the collision regime. The experiment was conducted on the Sand Engine near Kijkduin, the Netherlands, from October 18, 2021, to January 7, 2022. Two artificial unvegetated dunes were constructed just above the high water line to measure storm erosion and dune impacts from higher water levels and waves. During the experiment, three storms occurred that resulted in significant erosion of both dunes. The collected hydrodynamic data include pressure sensor and velocimeter data along two cross-shore transects. The collected morphodynamic data include bathymetry and topography surveys, optical backscatter sensor data in the inner surf zone, and a continuous cross-shore line-scanning lidar data set of the dune face. This comprehensive data set can be used to (1) study relevant nearshore hydrodynamic and morphodynamic processes that occur during calm conditions, moderate conditions, and storm conditions with dune erosion in the collision regime, and (2) validate existing dune erosion models.


Asunto(s)
Hidrodinámica , Países Bajos , Monitoreo del Ambiente
8.
J Am Chem Soc ; 146(12): 8242-8259, 2024 Mar 27.
Artículo en Inglés | MEDLINE | ID: mdl-38477967

RESUMEN

The DegP protease-chaperone operates within the periplasm of Gram-negative bacteria, where it assists in the regulation of protein homeostasis, promotes virulence, and is essential to survival under stress. To carry out these tasks, DegP forms a network of preorganized apo oligomers that facilitate the capture of substrates within distributions of cage-like complexes which expand to encapsulate clients of various sizes. Although the architectures of DegP cage complexes are well understood, little is known about the structures, dynamics, and interactions of client proteins within DegP cages and the relationship between client structural dynamics and function. Here, we probe host-guest interactions within a 600 kDa DegP cage complex throughout the DegP activation cycle using a model α-helical client protein through a combination of hydrodynamics measurements, methyl-transverse relaxation optimized spectroscopy-based solution nuclear magnetic resonance studies, and proteolytic activity assays. We find that in the presence of the client, DegP cages assemble cooperatively with few intermediates. Our data further show that the N-terminal half of the bound client, which projects into the interior of the cages, is predominantly unfolded and flexible, and exchanges between multiple conformational states over a wide range of time scales. Finally, we show that a concerted structural transition of the protease domains of DegP occurs upon client engagement, leading to activation. Together, our findings support a model of DegP as a highly cooperative and dynamic molecular machine that stabilizes unfolded states of clients, primarily via interactions with their C-termini, giving rise to efficient cleavage.


Asunto(s)
Proteínas de Choque Térmico , Hidrodinámica , Proteínas Periplasmáticas , Serina Endopeptidasas , Humanos , Proteínas de Choque Térmico/química , Proteínas de Choque Térmico/metabolismo , Chaperonas Moleculares/metabolismo , Espectroscopía de Resonancia Magnética
9.
J Acoust Soc Am ; 155(3): 2181-2191, 2024 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-38512016

RESUMEN

Data captured by a Synthetic Aperture Sonar (SAS) near Mobile Bay during the 2021 Undersea Remote Sensing experiment funded by the Office of Naval Research reveals near surface bubble clouds from wave breaking events and a large aggregation of fish. Tools developed for using SAS data to image hydrodynamic features in the water column were applied to observations of the bubble clouds and fish aggregation. Combining imagery and height data captured by the sonar array with a detection and tracking algorithm enables the trajectories, velocities, and behavior of fish in the aggregation to be observed. Fitting the velocity and height data of the tracked objects to a Gaussian mixture model and performing cluster analysis enables an estimate of the near-surface ambient velocity via observation of the movement of the bubble traces and the general direction of motion of the fish aggregation. We find that the velocity traces associated with bubbles are consistent with ambient currents as opposed to the direction of propagating wave crests while velocities of fish indicate relatively large, pelagic species.


Asunto(s)
Algoritmos , Movimiento , Animales , Movimiento (Física) , Peces , Hidrodinámica
10.
Biotechnol J ; 19(3): e2400063, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38528344

RESUMEN

The effective design of perfusion cell culture is currently challenging regarding balancing the operating parameters associated with the hydrodynamic conditions due to increased system complexity. To address this issue, cellular responses of an industrial CHO cell line to different types of hydrodynamic stress in benchtop perfusion bioreactors originating from agitation, sparging, and hollow fibers (HF) in the cell retention devices were systematically investigated here with the analysis of cell lysis. It was found that cell lysis was very common and most associated with the sparging stress, followed by the HF and lastly the agitation, consequently heavily impacting the estimation of process descriptors related to biomass. The results indicated that the agitation stress led to a reduced cell growth with a shift toward a more productive phenotype, suggesting an energy redirection from biomass formation to product synthesis, whereas the sparging stress had a small impact on the intracellular metabolic flux distribution but increased the cell death rate drastically. For HF stress, a similar cell maintenance profile was found as the sparging while the activity of glycolysis and the TCA cycle was significantly impeded, potentially leading to the lack of energy and thus a substantial decrease in cell-specific productivity. Moreover, a novel concept of volume average shear stress was developed to further understand the relations of different types of stress and the observed responses for an improved insight for the perfusion cell culture.


Asunto(s)
Reactores Biológicos , Hidrodinámica , Cricetinae , Animales , Técnicas de Cultivo de Célula/métodos , Células CHO , Cricetulus , Perfusión
11.
Methods Cell Biol ; 185: 79-97, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38556453

RESUMEN

Hepatocellular carcinoma (HCC) is one of the most prevalent malignant neoplasms. Current treatments for HCC, such as tyrosine kinase inhibitors, have limited efficacy, highlighting the urgent need for better therapies. Immunotherapies, including anti-programmed death receptor 1 (PD-1) and anti-Cytotoxic T-lymphocyte associated protein 4 (CTLA-4), and more recently, the combination of anti-PD-L1 and anti-vascular endothelial growth factor (VEGF) monoclonal antibodies, have shown efficacy against HCC, resulting in Food and Drug Administration (FDA) approval. However, these immunotherapies only show efficiency in a small proportion of patients, meaning there is a great need to improve and optimize treatments against HCC. Accurate animal models that mimic human HCC are necessary to help better understand the nature of these tumors, which in turn will allow the development and testing of new treatments. Existing pre-clinical HCC models can be divided into non-genetic and genetic models. Non-genetic models involve implanting human or murine HCC cell lines or inducing tumors using chemical compounds or dietary modifications. These models have limitations, including slow tumor development and a lack of resemblance to human HCC. Genetic models, on the other hand, manipulate gene expression to induce HCC in mice and provide a better understanding of the effects of specific genes on tumor development. One method commonly used to generate HCC is hydrodynamic tail vein injection (HTVI), which consists of the delivery of oncogenes directly to the liver, resulting in expression and subsequent hepatocyte transformation. Usually, Sleeping Beauty transposase-containing plasmids are used to achieve stable and long-term gene expression. Once the HCC tumor is generated, and a proper tumor microenvironment (TME) is established, it is important to study the immune compartment of the TME, which plays a crucial role in HCC development and response to treatment. Techniques like flow cytometry can be used to analyze the immune cell populations in HCC tumors and assess their impact on tumor development and survival in mice. In this article, we thoroughly describe an example of the methodology to successfully generate HCC murine models via HTVI, and we propose a way to characterize the immune TME by flow cytometry.


Asunto(s)
Carcinoma Hepatocelular , Neoplasias Hepáticas , Humanos , Ratones , Animales , Carcinoma Hepatocelular/tratamiento farmacológico , Carcinoma Hepatocelular/genética , Carcinoma Hepatocelular/metabolismo , Neoplasias Hepáticas/genética , Neoplasias Hepáticas/patología , Microambiente Tumoral , Hidrodinámica
12.
Int J Mol Sci ; 25(6)2024 Mar 08.
Artículo en Inglés | MEDLINE | ID: mdl-38542112

RESUMEN

The function of immune complexes in rheumatoid arthritis (RA) is related to their composition and size. Using dynamic light scattering (DLS), we investigated the link between the RA circulating immune complex (CIC) particles' size and the CIC immunoglobulin level. In this study, 30 RA patients and 30 healthy individuals were included. IgA, IgG, and IgM were found in all analyzed CICs, but more IgA and IgG were found in RA than in control CICs. In both control and RA CICs, DLS detected 50 particles that differed in size and clustered around two size groups: with a 7.5-164 nm radius and with a 342-1718 nm radius. An increased level of IgA in RA CICs, compared to control ones, was associated with more than 50% of CIC particles. In RA, compared to the control, a higher number of CICs with 28.2 nm, 531 nm, 712 nm, and 1718 nm particles and a lower number of CICs with 78.8 nm particles were detected. This particle distribution pattern did not reflect the changes in the CIC immunoglobulin level. Thus, RA elevated CIC IgA was linked with all these particles (except the 1718 nm particle), the IgM increase was linked with 43.8 nm and 712 nm particles, and the IgG increase was linked with the 712 nm particle only. This study provides the very first data on the association between CIC particles' size, CIC immunoglobulin level, and RA. It opens the possibility that the size of CICs determined by DLS can be used as a criterion in RA diagnosis or monitoring after a large-scale study confirmation.


Asunto(s)
Complejo Antígeno-Anticuerpo , Artritis Reumatoide , Humanos , Hidrodinámica , Inmunoglobulina G , Inmunoglobulina M , Inmunoglobulinas , Inmunoglobulina A
13.
Talanta ; 273: 125884, 2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38508128

RESUMEN

A hydrodynamic-based microfluidic chip consisted of two function units that could not only separate tumor cells (TCs) from whole blood but also remove residual blood cells was designed. The separation of TCs was achieved by a straight contraction-expansion array (CEA) microchannel on the front end of the chip. The addition of contractive structure brought a micro-vortex like Dean vortex that promoted cell focusing in the channel, while when cells entered the dilated region, the wall-induced lift force generated by the channel wall gave cells a push away from the wall. As the wall-induced lift force is proportional to the third power of the cell diameter, TCs with larger diameter will have a larger lateral migration under the wall-induced lift force, realizing the separation of TCs from blood sample. Fluorescent particles with diameters of 19.3 µm and 4.5 µm were used to simulate TCs and red blood cells, respectively, to verify the separation capacity of the proposed CEA microchannel for particles with different diameter. And a separation efficiency 98.7% for 19.3 µm particles and a removal rate 96.2% for 4.5 µm particles was observed at sample flow rate of 10 µL min-1 and sheath flow rate of 190 µL min-1. In addition, a separation efficiency about 96.1% for MCF-7 cells (stained with DiI) and removal rates of 96.2% for red blood cells (RBCs) and 98.7% for white blood cells (WBCs) were also obtained under the same condition. However, on account of the large number of blood cells in the blood, there will be a large number of blood cells remained in the isolated TCs, so a purification unit based on hydrodynamic filtration (HDF) was added after the separation microchannel. The purification channel is a size-dictated cell filter that can remove residual blood cells but retain TCs, thus achieving the purification of TCs. Combined the CEA microchannel and the purifier, the microchip facilitates sorting of MCF-7 cells from whole blood with a separation rate about 95.3% and a removal rate over 99.99% for blood cells at a sample flow rate of 10 µL min-1, sheath flow rate of 190 µL min-1 and washing flow rate of 63 µL min-1.


Asunto(s)
Técnicas Analíticas Microfluídicas , Microfluídica , Humanos , Hidrodinámica , Eritrocitos , Células MCF-7 , Leucocitos , Separación Celular
14.
Transgenic Res ; 33(1-2): 35-46, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38461212

RESUMEN

Chronic hepatitis B virus (HBV) poses a significant global health challenge as it can lead to acute or chronic liver disease and hepatocellular carcinoma (HCC). To establish a safety experimental model, a homolog of HBV-duck HBV (DHBV) is often used for HBV research. Hydrodynamic-based gene delivery (HGD) is an efficient method to introduce exogenous genes into the liver, making it suitable for basic research. In this study, a duck HGD system was first constructed by injecting the reporter plasmid pLIVE-SEAP via the ankle vein. The highest expression of SEAP occurred when ducks were injected with 5 µg/mL plasmid pLIVE-SEAP in 10% bodyweight volume of physiological saline for 6 s. To verify the distribution and expression of exogenous genes in multiple tissues, the relative level of foreign gene DNA and ß-galactosidase staining of LacZ were evaluated, which showed the plasmids and their products were located mainly in the liver. Additionally, ß-galactosidase staining and fluorescence imaging indicated the delivered exogenous genes could be expressed in a short time. Further, the application of the duck HGD model on DHBV treatment was investigated by transferring representative anti-HBV genes IFNα and IFNγ into DHBV-infected ducks. Delivery of plasmids expressing IFNα and IFNγ inhibited DHBV infection and we established a novel efficient HGD method in ducks, which could be useful for drug screening of new genes, mRNAs and proteins for anti-HBV treatment.


Asunto(s)
Carcinoma Hepatocelular , Virus de la Hepatitis B del Pato , Hepatitis B Crónica , Neoplasias Hepáticas , Animales , Humanos , Carcinoma Hepatocelular/patología , Patos/genética , Hepatitis B Crónica/patología , Neoplasias Hepáticas/patología , Hidrodinámica , Hígado , Virus de la Hepatitis B del Pato/genética , beta-Galactosidasa , ADN Viral/genética
15.
Comput Biol Med ; 173: 108309, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38520923

RESUMEN

BACKGROUND: Patient isolation units (PIUs) can be an effective method for effective infection control. Computational fluid dynamics (CFD) is commonly used for PIU design; however, optimizing this design requires extensive computational resources. Our study aims to provide data-driven models to determine the PIU settings, thereby promoting a more rapid design process. METHOD: Using CFD simulations, we evaluated various PIU parameters and room conditions to assess the impact of PIU installation on ventilation and isolation. We investigated particle dispersion from coughing subjects and airflow patterns. Machine-learning models were trained using CFD simulation data to estimate the performance and identify significant parameters. RESULTS: Physical isolation alone was insufficient to prevent the dispersion of smaller particles. However, a properly installed fan filter unit (FFU) generally enhanced the effectiveness of physical isolation. Ventilation and isolation performance under various conditions were predicted with a mean absolute percentage error of within 13%. The position of the FFU was found to be the most important factor affecting the PIU performance. CONCLUSION: Data-driven modeling based on CFD simulations can expedite the PIU design process by offering predictive capabilities and clarifying important performance factors. Reducing the time required to design a PIU is critical when a rapid response is required.


Asunto(s)
Hidrodinámica , Aislamiento de Pacientes , Humanos , Simulación por Computador , Control de Infecciones/métodos , Servicio de Urgencia en Hospital
16.
Comput Biol Med ; 173: 108328, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38552282

RESUMEN

Computational fluid dynamics (CFD) is a valuable asset for patient-specific cardiovascular-disease diagnosis and prognosis, but its high computational demands hamper its adoption in practice. Machine-learning methods that estimate blood flow in individual patients could accelerate or replace CFD simulation to overcome these limitations. In this work, we consider the estimation of vector-valued quantities on the wall of three-dimensional geometric artery models. We employ group-equivariant graph convolution in an end-to-end SE(3)-equivariant neural network that operates directly on triangular surface meshes and makes efficient use of training data. We run experiments on a large dataset of synthetic coronary arteries and find that our method estimates directional wall shear stress (WSS) with an approximation error of 7.6% and normalised mean absolute error (NMAE) of 0.4% while up to two orders of magnitude faster than CFD. Furthermore, we show that our method is powerful enough to accurately predict transient, vector-valued WSS over the cardiac cycle while conditioned on a range of different inflow boundary conditions. These results demonstrate the potential of our proposed method as a plugin replacement for CFD in the personalised prediction of hemodynamic vector and scalar fields.


Asunto(s)
Hemodinámica , Modelos Cardiovasculares , Humanos , Hemodinámica/fisiología , Vasos Coronarios/diagnóstico por imagen , Vasos Coronarios/fisiología , Simulación por Computador , Redes Neurales de la Computación , Estrés Mecánico , Hidrodinámica , Velocidad del Flujo Sanguíneo
17.
Comput Biol Med ; 173: 108383, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38555704

RESUMEN

Septoplasty and turbinectomy are among the most common interventions in the field of rhinology. Their constantly debated success rates and the lack of quantitative flow data of the entire nasal airway for planning the surgery necessitate methodological improvement. Thus, physics-based surgery planning is highly desirable. In this work, a novel and accurate method is developed to enhance surgery planning by physical aspects of respiration, i.e., to plan anti-obstructive surgery, for the first time a reinforcement learning algorithm is combined with large-scale computational fluid dynamics simulations. The method is integrated into an automated pipeline based on computed tomography imaging. The proposed surgical intervention is compared to a surgeon's initial plan, or the maximum possible intervention, which allows the quantitative evaluation of the intended surgery. Two criteria are considered: (i) the capability to supply the nasal airway with air expressed by the pressure loss and (ii) the capability to heat incoming air represented by the temperature increase. For a test patient suffering from a deviated septum near the nostrils and a bony spur further downstream, the method recommends surgical interventions exactly at these locations. For equal weights on the two criteria (i) and (ii), the algorithm proposes a slightly weaker correction of the deviated septum at the first location, compared to the surgeon's plan. At the second location, the algorithm proposes to keep the bony spur. For a larger weight on criterion (i), the algorithm tends to widen the nasal passage by removing the bony spur. For a larger weight on criterion (ii), the algorithm's suggestion approaches the pre-surgical state with narrowed channels that favor heat transfer. A second patient is investigated that suffers from enlarged turbinates in the left nasal passage. For equal weights on the two criteria (i) and (ii), the algorithm proposes a nearly complete removal of the inferior turbinate, and a moderate reduction of the middle turbinate. An increased weight on criterion (i) leads to an additional reduction of the middle turbinate, and a larger weight on criterion (ii) yields a solution with only slight reductions of both turbinates, i.e., focusing on a sufficient heat exchange between incoming air and the air-nose interface. The proposed method has the potential to improve the success rates of the aforementioned surgeries and can be extended to further biomedical flows.


Asunto(s)
Hidrodinámica , Obstrucción Nasal , Humanos , Simulación por Computador , Obstrucción Nasal/diagnóstico por imagen , Obstrucción Nasal/cirugía , Cornetes Nasales/diagnóstico por imagen , Cornetes Nasales/cirugía , Cavidad Nasal/diagnóstico por imagen , Cavidad Nasal/cirugía
18.
Environ Sci Pollut Res Int ; 31(17): 26123-26140, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38492146

RESUMEN

As an essential drinking water source and one of the largest eutrophic shallow lakes in China, the management of Lake Taihu requires an adequate understanding of its hydrodynamic characteristics. Studying the hydrodynamic characteristics of Lake Taihu based on field observations is limited owing to its large area and the lack of flow field stability. Previous studies using hydrodynamic models experienced challenges, such as dimensionality and lack of dynamic response analysis between flow field and realistic wind; therefore, the results were still inconclusive. In this study, a 3D model of Lake Taihu, calibrated and validated based on field observations, was used to simulate and compare three scenarios: windless, steady wind, and realistic wind. The hydrodynamic characteristics of Lake Taihu were analyzed as close to the actual conditions as possible. The results showed that wind-driven currents dominated the flow field in Lake Taihu, and the horizontal velocity driven by wind was more than 6 times that without wind. Observing a stable flow field in Lake Taihu was difficult because of the variability of realistic wind. The hydrodynamic characteristics of Lake Taihu were defined as "strongly affected by wind," "higher on the surface and smaller at the bottom," and "difference between the surface and the bottom." Vertical turbulent kinetic energy can be used to characterize the variable flow field of a wind-driven lake and has a positive correlation with wind speed. Therefore, it could be used as a key component to predict water blooms with practical implications.


Asunto(s)
Monitoreo del Ambiente , Lagos , Viento , Hidrodinámica , Eutrofización , China
19.
Mar Pollut Bull ; 201: 116248, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38479323

RESUMEN

Recently, there has been a notable rise in social and scientific interest regarding microplastic pollution in coasts where waves significantly influence flow patterns and material transport. This study explores typical short-term movement of buoyant microplastics driven by surf zone processes including wave transformation, breaking, and orbital motion. To track microplastics, Lagrangian Particle Tracking Model (PTM) coupled with Eulerian wave-current interaction model appropriate for coastal hydrodynamics was used. From the simulations, several important findings were observed. (i) In alongshore uniform beaches, lighter and larger buoyant microplastics tended to reach beach more readily. (ii) Accurate predictions of microplastic transport in the surf zone required the consideration of wave breaking. (iii) In alongshore non-uniform coastal bathymetry, rip-currents can send buoyant microplastics offshore, beyond the surf zone.


Asunto(s)
Microplásticos , Contaminantes Químicos del Agua , Plásticos , Contaminantes Químicos del Agua/análisis , Monitoreo del Ambiente , Hidrodinámica
20.
Acta Biomater ; 178: 41-49, 2024 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-38484832

RESUMEN

While most of current models investigating bone remodelling are based on matrix deformation, intramedullary pressure also plays a role. Bone remodelling is orchestrated by the Lacuno-Canalicular Network (LCN) fluid-flow. The aim of this review was hence to assess the influence of intramedullary pressure on the fluid circulation within the LCN. Three databases (Science Direct, Web of Science, and PubMed) were used. The first phase of the search returned 731 articles, of which 9 respected the inclusion/exclusion criteria and were included. These studies confirm the association between intramedullary pressure and fluid dynamics in the LCN. Among the included studies, 7 experimental studies using animal models and 2 numerical models were found. The studies were then ranked according to the nature of the applied loading, either axial compression or direct cyclic intramedullary pressure. The current review revealed that there is an influence of intramedullary pressure on LCN fluid dynamics and that this influence depends on the magnitude and the frequency of the applied pressure. Two studies confirmed that the influence was effective even without bone matrix deformation. While intramedullary pressure is closely associated with LCN fluid, there is a severe lack of studies on this topic. STATEMENT OF SIGNIFICANCE: Since the 1990's, numerical models developed to investigate fluid flow in bone submicrometric porous network are based on the flow induced by matrix deformation. Bone fluid flow is known to be involved in cells stimulation and hence directly influences bone remodeling. Different studies have shown that intramedullary pressure is also associated with bone mechanosensitive adaptation. This pressure is developed in bone due to blood circulation and is increased during loading or muscle stimulation. The current article reviews the studies investigating the influence of this pressure on bone porous fluid flow. They show that fluid flow is involved by this pressure even without bone matrix deformation. The current review article highlights the severe lack of studies about this mechanism.


Asunto(s)
Matriz Ósea , Huesos , Animales , Remodelación Ósea , Hidrodinámica , Modelos Animales , Osteocitos
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